References

Agresti, Alan. 2010. Analysis of Ordinal Categorical Data. Vol. 656. John Wiley & Sons.

———. 2012. Categorical Data Analysis. Vol. 792. John Wiley & Sons. https://www.wiley.com/en-us/Categorical+Data+Analysis%2C+3rd+Edition-p-9780470463635.

———. 2015. Foundations of Linear and Generalized Linear Models. John Wiley & Sons. https://www.wiley.com/en-us/Foundations+of+Linear+and+Generalized+Linear+Models-p-9781118730034.

———. 2018. An Introduction to Categorical Data Analysis. John Wiley & Sons. https://www.wiley.com/en-us/An+Introduction+to+Categorical+Data+Analysis%2C+3rd+Edition-p-9781119405283.

Anderson, Edgar. 1935. “The Irises of the Gaspe Peninsula.” Bulletin of American Iris Society 59: 2–5.

Andrews, David F, and Agnes M Herzberg. 2012. Data: A Collection of Problems from Many Fields for the Student and Research Worker. Springer Science & Business Media. https://link.springer.com/book/10.1007/978-1-4612-5098-2.

Aragon, Tomas J. 2018. “Population Health Thinking with Bayesian Networks.” https://escholarship.org/uc/item/8000r5m5.

Aragon, Tomas J. 2013. Applied Epidemiology Using r. Online. https://tbrieder.org/epidata/course_reading/e_aragon.pdf.

———. 2017. Population Health Data Science with r: Transforming Data into Actionable Knowledge. Online. https://bookdown.org/medepi/phds/.

Bache, Stefan Milton, and Hadley Wickham. 2022. Magrittr: A Forward-Pipe Operator for r. https://CRAN.R-project.org/package=magrittr.

Banerjee, Sudipto, and Anindya Roy. 2014. Linear Algebra and Matrix Analysis for Statistics. Vol. 181. Crc Press Boca Raton. https://www.routledge.com/Linear-Algebra-and-Matrix-Analysis-for-Statistics/Banerjee-Roy/p/book/9781420095388.

Batra, Neale, ed. 2024. The Epidemiologist r Handbook. Online. https://www.epirhandbook.com/.

Canchola, Alison J, Susan L Stewart, Leslie Bernstein, Dee W West, Ronald K Ross, Dennis Deapen, Richard Pinder, et al. 2003. “Cox Regression Using Different Time-Scales.” Western Users of SAS Software. https://www.lexjansen.com/wuss/2003/DataAnalysis/i-cox_time_scales.pdf.

Cannell, Brad, and Melvin Livingston. 2024. R for Epidemiology. Online. https://www.r4epi.com/.

Casella, George, and Roger Berger. 2002. Statistical Inference. 2nd ed. Cengage Learning. https://www.cengage.com/c/statistical-inference-2e-casella-berger/9780534243128/.

Chang, Winston. 2024. R Graphics Cookbook: Practical Recipes for Visualizing Data. O’Reilly Media. https://r-graphics.org/.

Chatterjee, Samprit, and Ali S Hadi. 2015. Regression Analysis by Example. John Wiley & Sons. https://www.wiley.com/en-us/Regression+Analysis+by+Example%2C+4th+Edition-p-9780470055458.

Clayton, David, and Michael Hills. 2013. Statistical Models in Epidemiology. Oxford University Press. https://global.oup.com/academic/product/statistical-models-in-epidemiology-9780199671182.

Copelan, Edward A, James C Biggs, James M Thompson, Pamela Crilley, Jeff Szer, John P Klein, Neena Kapoor, Belinda R Avalos, Isabel Cunningham, and Kerry Atkinson. 1991. “Treatment for Acute Myelocytic Leukemia with Allogeneic Bone Marrow Transplantation Following Preparation with BuCy2.” https://doi.org/10.1182/blood.V78.3.838.838.

Dalgaard, Peter. 2008. Introductory Statistics with r. New York, NY: Springer New York. https://link.springer.com/book/10.1007/978-0-387-79054-1.

Dobson, Annette J, and Adrian G Barnett. 2018. An Introduction to Generalized Linear Models. 4th ed. CRC press. https://doi.org/10.1201/9781315182780.

Dunn, Peter K, and Gordon K Smyth. 2018. Generalized Linear Models with Examples in r. Vol. 53. Springer. https://link.springer.com/book/10.1007/978-1-4419-0118-7.

Efron, Bradley, and David V Hinkley. 1978. “Assessing the Accuracy of the Maximum Likelihood Estimator: Observed Versus Expected Fisher Information.” Biometrika 65 (3): 457–83.

Faraway, Julian J. 2016. Extending the Linear Model with r: Generalized Linear, Mixed Effects and Nonparametric Regression Models. 2nd ed. Chapman; Hall/CRC. https://doi.org/10.1201/9781315382722.

———. 2025. Linear Models with R. https://www.routledge.com/Linear-Models-with-R/Faraway/p/book/9781032583983.

Fay, Colin, Sébastien Rochette, Vincent Guyader, and Cervan Girard. 2021. Engineering Production-Grade Shiny Apps. Chapman; Hall/CRC. https://engineering-shiny.org/.

Fieller, Nick. 2016. Basics of Matrix Algebra for Statistics with r. Chapman; Hall/CRC. https://doi.org/10.1201/9781315370200.

Fox, John. 2015. Applied Regression Analysis and Generalized Linear Models. Sage publications.

Gelman, Andrew, and Jennifer Hill. 2006. Data Analysis Using Regression and Multilevel/Hierarchical Models. Cambridge university press.

Grambsch, Patricia M, and Terry M Therneau. 1994. “Proportional Hazards Tests and Diagnostics Based on Weighted Residuals.” Biometrika 81 (3): 515–26. https://doi.org/10.1093/biomet/81.3.515.

Hardin, James W, and Joseph M Hilbe. 2018. Generalized Linear Models and Extensions. 4th ed. Stata Press.

Harrell, Frank E. 2015. Regression Modeling Strategies: With Applications to Linear Models, Logistic Regression, and Survival Analysis. 2nd ed. Springer. https://doi.org/10.1007/978-3-319-19425-7.

Hosmer, David W, Stanley Lemeshow, and Rodney X Sturdivant. 2013. Applied Logistic Regression. John Wiley & Sons. https://onlinelibrary.wiley.com/doi/book/10.1002/9781118548387.

James, Gareth, Daniela Witten, Trevor Hastie, Robert Tibshirani, et al. 2013. An Introduction to Statistical Learning. Vol. 112. Springer. https://www.statlearning.com/.

Jewell, Nicholas P. 2003. Statistics for Epidemiology. Oxford, UK: Chapman; Hall/CRC. https://www.routledge.com/Statistics-for-Epidemiology/Jewell/p/book/9781584884330.

Kalbfleisch, John D, and Ross L Prentice. 2011. The Statistical Analysis of Failure Time Data. John Wiley & Sons.

Kaplan, Daniel. 2022. MOSAIC Calculus. www.mosaic-web.org. www.mosaic-web.org.

Khuri, André I. 2003. Advanced Calculus with Applications in Statistics. John Wiley & Sons. https://www.wiley.com/en-us/Advanced+Calculus+with+Applications+in+Statistics%2C+2nd+Edition-p-9780471391043.

Klein, John P, and Melvin L Moeschberger. 2003. Survival Analysis: Techniques for Censored and Truncated Data. Vol. 1230. Springer. https://link.springer.com/book/10.1007/b97377.

Kleinbaum, David G, and Mitchel Klein. 2010. Logistic Regression: A Self-Learning Text. 3rd ed. Springer. https://link.springer.com/book/10.1007/978-1-4419-1742-3.

———. 2012. Survival Analysis: A Self-Learning Text. 3rd ed. Springer. https://link.springer.com/book/10.1007/978-1-4419-6646-9.

Kleinbaum, David G, Lawrence L Kupper, Azhar Nizam, K Muller, and ES Rosenberg. 2014. Applied Regression Analysis and Other Multivariable Methods. 5th ed. Cengage Learning. https://www.cengage.com/c/applied-regression-analysis-and-other-multivariable-methods-5e-kleinbaum/9781285051086/.

Kleinman, Ken, and Nicholas J Horton. 2009. SAS and r: Data Management, Statistical Analysis, and Graphics. Chapman; Hall/CRC. https://www.routledge.com/SAS-and-R-Data-Management-Statistical-Analysis-and-Graphics-Second-Edition/Kleinman-Horton/p/book/9781466584495.

Kuhn, Max, and Julia Silge. 2022. Tidy Modeling with r. " O’Reilly Media, Inc.". https://www.tmwr.org/.

Kutner, Michael H, Christopher J Nachtsheim, John Neter, and William Li. 2005. Applied Linear Statistical Models. McGraw-Hill.

Kutoyants, Yury A. 2023. Introduction to the Statistics of Poisson Processes and Applications. Springer Nature. https://link.springer.com/book/10.1007/978-3-031-37054-0.

Lawrance, Rachael, Evgeny Degtyarev, Philip Griffiths, Peter Trask, Helen Lau, Denise D’Alessio, Ingolf Griebsch, Gudrun Wallenstein, Kim Cocks, and Kaspar Rufibach. 2020. “What Is an Estimand, and How Does It Relate to Quantifying the Effect of Treatment on Patient-Reported Quality of Life Outcomes in Clinical Trials?” Journal of Patient-Reported Outcomes 4 (1): 1–8. https://link.springer.com/article/10.1186/s41687-020-00218-5.

McCullagh, Peter, and J. A. Nelder. 1989. Generalized Linear Models. 2nd ed. Routledge. https://www.utstat.toronto.edu/~brunner/oldclass/2201s11/readings/glmbook.pdf.

McLachlan, Geoffrey J, and Thriyambakam Krishnan. 2007. The EM Algorithm and Extensions. 2nd ed. John Wiley & Sons. https://doi.org/10.1002/9780470191613.

Moore, Dirk F. 2016. Applied Survival Analysis Using r. Vol. 473. Springer. https://doi.org/10.1007/978-3-319-31245-3.

Muenchen, Robert A. 2011. R for SAS and SPSS Users. Springer Science & Business Media. https://link.springer.com/book/10.1007/978-1-4614-0685-3.

Myatt, Mark. 2022. Practical r for Epidemiologists. Online. https://practical-r.org/index.html.

Nahhas, Ramzi W. 2023. An Introduction to r for Research. https://bookdown.org/rwnahhas/IntroToR/.

———. 2024. Introduction to Regression Methods for Public Health Using r. CRC Press. https://www.bookdown.org/rwnahhas/RMPH/.

Nelder, John Ashworth, and Robert WM Wedderburn. 1972. “Generalized Linear Models.” Journal of the Royal Statistical Society Series A: Statistics in Society 135 (3): 370–84.

Newey, Whitney K, and Daniel McFadden. 1994. “Large Sample Estimation and Hypothesis Testing.” In Handbook of Econometrics, edited by Robert Engle and Dan McFadden, 4:2111–2245. Elsevier. https://doi.org/https://doi.org/10.1016/S1573-4412(05)80005-4.

Pebesma, Edzer, and Roger Bivand. 2023. Spatial Data Science: With Applications in R. Boca Raton: Chapman; Hall/CRC. https://doi.org/10.1201/9780429459016.

Pohl, Moritz, Lukas Baumann, Rouven Behnisch, Marietta Kirchner, Johannes Krisam, and Anja Sander. 2021. “Estimands—A Basic Element for Clinical Trials.” Deutsches Ärzteblatt International 118 (51-52): 883–88. https://doi.org/10.3238/arztebl.m2021.0373.

Polin, Richard A, William W Fox, and Steven H Abman. 2011. Fetal and Neonatal Physiology. 4th ed. Elsevier health sciences.

Roback, Paul, and Julie Legler. 2021. Beyond Multiple Linear Regression: Applied Generalized Linear Models and Multilevel Models in r. Chapman; Hall/CRC. https://bookdown.org/roback/bookdown-BeyondMLR/.

Rodrigues, Bruno. 2023. Building Reproducible Analytical Pipelines with r. Online. https://raps-with-r.dev/.

Rosenman, Ray H, Richard J Brand, C David Jenkins, Meyer Friedman, Reuben Straus, and Moses Wurm. 1975. “Coronary Heart Disease in the Western Collaborative Group Study: Final Follow-up Experience of 8 1/2 Years.” JAMA 233 (8): 872–77. https://doi.org/10.1001/jama.1975.03260080034016.

Ross, Kevin. 2022. An Introduction to Bayesian Reasoning and Methods. Online. https://bookdown.org/kevin_davisross/bayesian-reasoning-and-methods/.

Searle, Shayle R, and Andre I Khuri. 2017. Matrix Algebra Useful for Statistics. John Wiley & Sons.

Seber, George AF, and Alan J Lee. 2012. Linear Regression Analysis. 2nd ed. John Wiley & Sons. https://www.wiley.com/en-us/Linear+Regression+Analysis%2C+2nd+Edition-p-9781118274422.

Selvin, Steve. 2001. Epidemiologic Analysis: A Case-Oriented Approach. Oxford University Press.

Soch, Joram, ed. 2023. The Book of Statistical Proofs. Zenodo. https://doi.org/10.5281/ZENODO.4305949.

Suárez, Erick, Cynthia M Pérez, Roberto Rivera, and Melissa N Martı́nez. 2017. Applications of Regression Models in Epidemiology. John Wiley & Sons.

Van Buuren, Stef. 2018. Flexible Imputation of Missing Data. CRC press. https://stefvanbuuren.name/fimd/.

Venables, Bill. 2023. codingMatrices: Alternative Factor Coding Matrices for Linear Model Formulae (version 0.4.0). https://CRAN.R-project.org/package=codingMatrices.

Vittinghoff, Eric, David V Glidden, Stephen C Shiboski, and Charles E McCulloch. 2012. Regression Methods in Biostatistics: Linear, Logistic, Survival, and Repeated Measures Models. 2nd ed. Springer. https://doi.org/10.1007/978-1-4614-1353-0.

Weisberg, Sanford. 2005. Applied Linear Regression. Vol. 528. John Wiley & Sons.

Wickham, Hadley. 2019. Advanced r. Chapman; Hall/CRC. https://adv-r.hadley.nz/index.html.

———. 2021. Mastering Shiny. " O’Reilly Media, Inc.". https://mastering-shiny.org/.

Wickham, Hadley, Mara Averick, Jennifer Bryan, Winston Chang, Lucy D’Agostino McGowan, Romain François, Garrett Grolemund, et al. 2019. “Welcome to the tidyverse.” Journal of Open Source Software 4 (43): 1686. https://doi.org/10.21105/joss.01686.

Wickham, Hadley, and Jennifer Bryan. 2023. R Packages. O’Reilly Media, Inc. https://r-pkgs.org/.

Wickham, Hadley, Mine Çetinkaya-Rundel, and Garrett Grolemund. 2023. R for Data Science. " O’Reilly Media, Inc.". https://r4ds.hadley.nz/.

Wood, Simon N. 2017. Generalized Additive Models: An Introduction with r. chapman; hall/CRC.

Woodward, Mark. 2013. Epidemiology: Study Design and Data Analysis. CRC press. https://www.routledge.com/Epidemiology-Study-Design-and-Data-Analysis-Third-Edition/Woodward/p/book/9781439839706.

Zeileis, Achim, Christian Kleiber, and Simon Jackman. 2008. “Regression Models for Count Data in R.” Journal of Statistical Software 27 (8). https://www.jstatsoft.org/v27/i08/.